{ "_id": "6a1ef9e1b401979e734181ce", "Type": "Package", "Package": "tinyVAST", "Title": "Multivariate Spatio-Temporal Models using Structural Equations", "Version": "1.6.0", "Date": "2026-05-18", "Authors@R": "c(\nperson(c(\"James\", \"T.\"), \"Thorson\", , \"James.Thorson@noaa.gov\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-7415-1010\")),\nperson(c(\"Sean\", \"C.\"), \"Anderson\", , \"sean@seananderson.ca\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-9563-1937\"))\n)", "Description": "Fits a wide variety of multivariate spatio-temporal models\nwith simultaneous and lagged interactions among variables\n(including vector autoregressive spatio-temporal ('VAST')\ndynamics) for areal, continuous, or network spatial domains. It\nincludes time-variable, space-variable, and space-time-variable\ninteractions using dynamic structural equation models ('DSEM')\nas expressive interface, and the 'mgcv' package to specify\nsplines via the formula interface. See Thorson et al. (2025)\n for more details.", "License": "GPL-3", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Encoding": "UTF-8", "LazyData": "true", "LazyDataCompression": "xz", "Roxygen": "list(markdown = TRUE)", "URL": "https://vast-lib.github.io/tinyVAST/", "BugReports": "https://github.com/vast-lib/tinyVAST/issues/", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libabsl-dev cmake libfontconfig1-dev\nlibfreetype6-dev libgdal-dev gdal-bin libgeos-dev libglpk-dev\nmake libicu-dev libxml2-dev libssl-dev libproj-dev\nlibsqlite3-dev libudunits2-dev", "Repository": "https://vast-lib.r-universe.dev", "Date/Publication": "2026-05-19 02:48:42 UTC", "RemoteUrl": "https://github.com/vast-lib/tinyvast", "RemoteRef": "HEAD", "RemoteSha": "1642d8e96567341fea6cfa3ea622880f38994863", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-19 04:05:15 UTC", "User": "root" }, "Author": "James T. Thorson [aut, cre] (ORCID:\n),\nSean C. Anderson [aut] (ORCID: )", "Maintainer": "James T. Thorson ", "MD5sum": "b722c4b28c5eb4618fb4e6b0ad7b7dce", "_user": "vast-lib", "_type": "src", "_file": "tinyVAST_1.6.0.tar.gz", "_fileid": "8525d18d356b8f1ed716afc9330f193cb2ec18683f48b99391e3914fe10a6cc2", "_filesize": 6287504, "_sha256": "8525d18d356b8f1ed716afc9330f193cb2ec18683f48b99391e3914fe10a6cc2", "_created": "2026-05-19T04:05:15.000Z", "_published": "2026-06-02T15:42:25.668Z", "_distro": "noble", "_jobs": [ { "job": 79110677995, "time": 420, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7074719513" }, { "job": 79110677411, "time": 442, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7074723640" }, { "job": 79110678768, "time": 407, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7074717246" }, { "job": 79110678082, "time": 422, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7074719849" }, { "job": 79110678237, "time": 398, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7074711885" }, { "job": 79110678018, "time": 531, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7074736917" }, { "job": 79110677560, "time": 422, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7074716329" }, { "job": 79110677347, "time": 653, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7074753770" }, { "job": 79110676932, "time": 639, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7074648501" }, { "job": 79110676576, "time": 237, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7362621870" }, { "job": 79110677062, "time": 438, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7074722926" }, { "job": 79110678306, "time": 456, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7074726084" }, { "job": 79110677925, "time": 423, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7074720117" } ], "_buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/vast-lib/tinyvast", "_commit": { "id": "1642d8e96567341fea6cfa3ea622880f38994863", "author": "James T. Thorson ", "committer": "GitHub ", "message": "Dev (#130)\n\n* initial dev for NNGP\n\n* add tmb_random argument\n\n* add NNGP for omega\n\n* add NNGP throughout\n\n* Update develop_nngp.R\n\n* speed up NNGP pre-calculations\n\n* clean up NNGP code\n\n* add option for partial tmb_par\n\n* adding L-BFGS-B optimizer option\n\n* using GPvecchia for ordering...\n\n... and TMB::newton when profiling all parameters (i.e., fast penalized likelihood)\n\n* small fix\n\n* adding 8-bit indexing flag ...\n\n... and moving new optimizer options from `control` to `development`\n\n* updating `delta_options` roxygen ...\n\n... to note time_term and spatial_varying\n\n* Rename sfnetwork.R to spatial_domains.R\n\n* add make_nngp_domain\n\n* Create github_notes.R\n\n* Update github_notes.R\n\n* add example for rotate_factors\n\n* devtools::document()\n\n* Create simulation_logkappa.R\n\n* make CI happy\n\n* fix rotate_pca example\n\n* Update simulation_logkappa.R\n\n* add informative logkappa startvalue ...\n\n... for areal-model SAR\n\n* change SAR for areal domain\n\n* make CI happy for pkgdown\n\n* make CI happy\n\n* Update DESCRIPTION\n\n* add `block` to integrate_output\n\n* fix typo in last commit\n\n* fix another typo\n\n* fix more bugs\n\n* more fixes\n\n* Create test_batch_integrate_output.R\n\n* add SAN github action\n\n* try to make san-check happy\n\n* stage for CRAN release\n\n* update docs\n\n* Update _pkgdown.yml\n\n---------\n\nCo-authored-by: Jim Thorson <50178738+James-Thorson-NOAA@users.noreply.github.com>", "time": 1779158922 }, "_maintainer": { "name": "James T. Thorson", "email": "james.thorson@noaa.gov", "login": "james-thorson-noaa", "orcid": "0000-0001-7415-1010", "description": "", "uuid": 50178738 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "TMB", "role": "LinkingTo" }, { "package": "corpcor", "role": "Imports" }, { "package": "fmesher", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "Matrix", "version": ">= 1.3.0", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "mgcv", "role": "Imports" }, { "package": "sem", "role": "Imports" }, { "package": "sf", "role": "Imports" }, { "package": "sfnetworks", "role": "Imports" }, { "package": "TMB", "version": ">= 1.9.17", "role": "Imports" }, { "package": "units", "role": "Imports" }, { "package": "checkmate", "role": "Imports" }, { "package": "abind", "role": "Imports" }, { "package": "sdmTMB", "role": "Imports" }, { "package": "dsem", "version": ">= 1.6.0", "role": "Imports" }, { "package": "insight", "role": "Imports" }, { "package": "cv", "role": "Imports" }, { "package": "sparseinv", "role": "Imports" }, { "package": "gstat", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "GpGp", "role": "Imports" }, { "package": "GPvecchia", "role": "Imports" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "lattice", "role": "Suggests" }, { "package": "mvtnorm", "role": "Suggests" }, { "package": "pdp", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "rnaturalearth", "role": "Suggests" }, { "package": "rnaturalearthdata", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "tweedie", "role": "Suggests" }, { "package": "viridisLite", "role": "Suggests" }, { "package": "visreg", "role": "Suggests" }, { "package": "plyr", "role": "Suggests" }, { "package": "DHARMa", "role": "Suggests" }, { "package": "glmmTMB", "role": "Suggests" }, { "package": "tibble", "role": "Suggests" }, { "package": "RANN", "role": "Suggests" } ], "_owner": "vast-lib", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-29", "n": 1 }, { "week": "2025-36", "n": 1 }, { "week": "2025-38", "n": 2 }, { "week": "2025-51", "n": 2 }, { "week": "2026-13", "n": 1 }, { "week": "2026-15", "n": 1 }, { "week": "2026-16", "n": 1 }, { "week": "2026-17", "n": 5 }, { "week": "2026-21", "n": 1 } ], "_tags": [ { "name": "v1.2.0", "date": "2025-07-19" }, { "name": "v1.3.0", "date": "2025-09-15" }, { "name": "v1.4.0", "date": "2025-12-21" }, { "name": "v1.5.0", "date": "2026-03-23" }, { "name": "v1.5.1", "date": "2026-04-14" }, { "name": "v1.6.0", "date": "2026-05-19" } ], "_topics": [ "dynamic-structural-equation-models", "vector-autoregressive-spatio-temporal-model", "cpp" ], "_stars": 17, "_contributors": [ { "user": "james-thorson-noaa", "count": 97, "uuid": 50178738 }, { "user": "seananderson", "count": 80, "uuid": 19349 }, { "user": "james-thorson", "count": 27, "uuid": 7989837 } ], "_userbio": { "uuid": 157166139, "type": "organization", "name": "vast-lib" }, "_downloads": { "count": 610, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tinyVAST" }, "_devurl": "https://github.com/vast-lib/tinyvast", "_pkgdown": "https://vast-lib.github.io/tinyVAST/", "_searchresults": 74, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/tinyVAST.html", "manual.pdf" ], "_homeurl": "https://github.com/vast-lib/tinyvast", "_realowner": "vast-lib", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2025-03-13" }, { "version": "1.0.1", "date": "2025-03-22" }, { "version": "1.1.0", "date": "2025-05-03" }, { "version": "1.1.1", "date": "2025-05-07" }, { "version": "1.2.0", "date": "2025-07-19" }, { "version": "1.3.0", "date": "2025-09-13" }, { "version": "1.4.0", "date": "2025-12-20" }, { "version": "1.5.0", "date": "2026-03-23" }, { "version": "1.5.1", "date": "2026-04-14" } ], "_exports": [ "add_mesh_covariates", "add_predictions", "cAIC", "conditional_gmrf", "delta_gamma", "delta_lognormal", "deviance_explained", "integrate_output", "lognormal", "make_dsem_ram", "make_eof_ram", "make_nngp_domain", "make_sem_ram", "nbinom1", "nbinom2", "project", "reload_model", "rmvnorm_prec", "rotate_pca", "sample_variable", "sanity", "sfnetwork_evaluator", "sfnetwork_mesh", "simulate_sfnetwork", "spatial_cor", "student", "term_covariance", "tinyVAST", "tinyVASTcontrol", "tweedie" ], "_datasets": [ { "name": "alaska_sponge_coral_fish", "title": "Data to analyze sponge-coral-fish associations", "object": "alaska_sponge_coral_fish", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "atlantic_yellowtail", "title": "Northwest Atlantic yellowtail", "object": "atlantic_yellowtail", "class": [ "data.frame" ], "fields": [ "year", "season", "latitude", "longitude", "swept", "weight" ], "rows": 5259, "table": true, "tojson": true }, { "name": "bering_sea", "title": "Survey domain for the eastern and northern Bering Sea surveys", "object": "bering_sea", "class": [ "sfc_POLYGON", "sfc" ], "fields": [], "table": true, "tojson": true }, { "name": "bering_sea_capelin_forecasts", "title": "Data to demonstrate probabilistic forecasting", "object": "bering_sea_capelin_forecasts", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "bering_sea_pollock_ages", "title": "Survey catch-rates at age for Alaska pollock in the Eastern and Northern Bering Sea", "object": "bering_sea_pollock_ages", "class": [ "data.frame" ], "fields": [ "Abundance_per_hectare", "Year", "Age", "Lat", "Lon" ], "rows": 247545, "table": true, "tojson": true }, { "name": "bering_sea_pollock_vast", "title": "Estimated proportion-at-age for Alaska pollock using VAST", "object": "bering_sea_pollock_vast", "class": [ "matrix", "array" ], "fields": [ "1982", "1983", "1984", "1985", "1986", "1987", "1988", "1989", "1990", "1991", "1992", "1993", "1994", "1995", "1996", "1997", "1998", "1999", "2000", "2001", "2002", "2003", "2004", "2005", "2006", "2007", "2008", "2009", "2010", "2011", "2012", "2013", "2014", "2015", "2016", "2017", "2018", "2019", "2021", "2022", "2023" ], "rows": 15, "table": true, "tojson": true }, { "name": "condition_and_density", "title": "Condition and density example", "object": "condition_and_density", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "red_grouper_diet", "title": "Data to demonstrate model-based diet proportions", "object": "red_grouper_diet", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "red_snapper", "title": "Presence/absence, count, and biomass data for red snapper", "object": "red_snapper", "class": [ "data.frame" ], "fields": [ "Year", "Lat", "Lon", "AreaSwept_km2", "Response_variable", "Data_type" ], "rows": 8687, "table": true, "tojson": true }, { "name": "red_snapper_shapefile", "title": "Shapefile for red snapper analysis", "object": "red_snapper_shapefile", "class": [ "sf", "tbl_df", "tbl", "data.frame" ], "fields": [ "ID", "geometry" ], "rows": 1, "table": false, "tojson": true }, { "name": "salmon_returns", "title": "North Pacific salmon returns", "object": "salmon_returns", "class": [ "data.frame" ], "fields": [ "Species", "Year", "Region", "Biomass" ], "rows": 2688, "table": true, "tojson": true }, { "name": "sea_ice", "title": "Arctic September sea ice concentrations", "object": "sea_ice", "class": [ "data.frame" ], "fields": [ "lon", "lat", "year", "ice_concentration" ], "rows": 33151, "table": true, "tojson": true } ], "_help": [ { "page": "add_mesh_covariates", "title": "Add mesh covariates to vertices and triangles", "topics": [ "add_mesh_covariates" ] }, { "page": "add_predictions", "title": "Add predictions to data-list", "topics": [ "add_predictions" ] }, { "page": "alaska_sponge_coral_fish", "title": "Data to analyze sponge-coral-fish associations", "topics": [ "alaska_sponge_coral_fish" ] }, { "page": "atlantic_yellowtail", "title": "Northwest Atlantic yellowtail", "topics": [ "atlantic_yellowtail" ] }, { "page": "bering_sea", "title": "Survey domain for the eastern and northern Bering Sea surveys", "topics": [ "bering_sea" ] }, { "page": "bering_sea_capelin_forecasts", "title": "Data to demonstrate probabilistic forecasting", "topics": [ "bering_sea_capelin_forecasts" ] }, { "page": "bering_sea_pollock_ages", "title": "Survey catch-rates at age for Alaska pollock in the Eastern and Northern Bering Sea", "topics": [ "bering_sea_pollock_ages" ] }, { "page": "bering_sea_pollock_vast", "title": "Estimated proportion-at-age for Alaska pollock using VAST", "topics": [ "bering_sea_pollock_vast" ] }, { "page": "cAIC", "title": "Calculate conditional AIC", "topics": [ "cAIC" ] }, { "page": "classify_variables", "title": "Classify variables path", "topics": [ "classify_variables" ] }, { "page": "condition_and_density", "title": "Condition and density example", "topics": [ "condition_and_density" ] }, { "page": "conditional_gmrf", "title": "Conditional simulation from a GMRF", "topics": [ "conditional_gmrf" ] }, { "page": "deviance_explained", "title": "Calculate deviance explained", "topics": [ "deviance_explained" ] }, { "page": "families", "title": "Additional families", "topics": [ "delta_gamma", "delta_lognormal", "Families" ] }, { "page": "get_data.tinyVAST", "title": "Get data", "topics": [ "get_data.tinyVAST" ] }, { "page": "GetResponse.tinyVAST", "title": "Get response", "topics": [ "GetResponse.tinyVAST" ] }, { "page": "integrate_output", "title": "Integration for target variable", "topics": [ "integrate_output" ] }, { "page": "logLik.tinyVAST", "title": "Extract the (marginal) log-likelihood of a tinyVAST model", "topics": [ "logLik.tinyVAST" ] }, { "page": "make_dsem_ram", "title": "Make a RAM (Reticular Action Model)", "topics": [ "make_dsem_ram" ] }, { "page": "make_eof_ram", "title": "Make a RAM (Reticular Action Model)", "topics": [ "make_eof_ram" ] }, { "page": "make_nngp_domain", "title": "Make spatial object for NNGP", "topics": [ "make_nngp_domain" ] }, { "page": "make_sem_ram", "title": "Make a RAM (Reticular Action Model) from a SEM (structural equation model)", "topics": [ "make_sem_ram" ] }, { "page": "parse_path", "title": "Parse path", "topics": [ "parse_path" ] }, { "page": "plot.nngp_domain", "title": "Plot nngp_domain", "topics": [ "plot.nngp_domain" ] }, { "page": "predict.tinyVAST", "title": "Predict using vector autoregressive spatio-temporal model", "topics": [ "predict.tinyVAST" ] }, { "page": "print.tinyVAST", "title": "print summary of tinyVAST model", "topics": [ "print.tinyVAST" ] }, { "page": "project", "title": "Project tinyVAST to future times (EXPERIMENTAL)", "topics": [ "project" ] }, { "page": "red_grouper_diet", "title": "Data to demonstrate model-based diet proportions", "topics": [ "red_grouper_diet" ] }, { "page": "red_snapper", "title": "Presence/absence, count, and biomass data for red snapper", "topics": [ "red_snapper" ] }, { "page": "red_snapper_shapefile", "title": "Shapefile for red snapper analysis", "topics": [ "red_snapper_shapefile" ] }, { "page": "reload_model", "title": "Reload a previously fitted model", "topics": [ "reload_model" ] }, { "page": "residuals.tinyVAST", "title": "Calculate deviance or response residuals for tinyVAST", "topics": [ "residuals.tinyVAST" ] }, { "page": "rmvnorm_prec", "title": "Multivariate Normal Random Deviates using Sparse Precision", "topics": [ "rmvnorm_prec" ] }, { "page": "rotate_pca", "title": "Rotate factors to match Principal-Components Analysis", "topics": [ "rotate_pca" ] }, { "page": "salmon_returns", "title": "North Pacific salmon returns", "topics": [ "salmon_returns" ] }, { "page": "sample_variable", "title": "Sample from predictive distribution of a variable", "topics": [ "sample_variable" ] }, { "page": "sanity", "title": "Sanity check of a tinyVAST model", "topics": [ "sanity" ] }, { "page": "sea_ice", "title": "Arctic September sea ice concentrations", "topics": [ "sea_ice" ] }, { "page": "sfnetwork_evaluator", "title": "Construct projection matrix for stream network", "topics": [ "sfnetwork_evaluator" ] }, { "page": "sfnetwork_mesh", "title": "Make mesh for stream network", "topics": [ "sfnetwork_mesh" ] }, { "page": "simulate_sfnetwork", "title": "Simulate GMRF for stream network", "topics": [ "simulate_sfnetwork" ] }, { "page": "simulate.tinyVAST", "title": "Simulate new data from a fitted model", "topics": [ "simulate.tinyVAST" ] }, { "page": "spatial_cor", "title": "Approximate spatial correlation", "topics": [ "spatial_cor" ] }, { "page": "summary.tinyVAST", "title": "summarize tinyVAST", "topics": [ "summary.tinyVAST" ] }, { "page": "term_covariance", "title": "Extract covariance", "topics": [ "term_covariance" ] }, { "page": "tinyVAST", "title": "Fit vector autoregressive spatio-temporal model", "topics": [ "tinyVAST" ] }, { "page": "tinyVASTcontrol", "title": "Control parameters for tinyVAST", "topics": [ "tinyVASTcontrol" ] }, { "page": "vcov.tinyVAST", "title": "Extract Variance-Covariance Matrix", "topics": [ "vcov.tinyVAST" ] } ], "_pkglogo": "https://github.com/vast-lib/tinyvast/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/vast-lib/tinyvast/raw/HEAD/README.md", "_rundeps": [ "abind", "arm", "assertthat", "backports", "base64enc", "BH", "boot", "broom", "cachem", "car", "carData", "checkmate", "class", "classInt", "cli", "coda", "codetools", "colorspace", "corpcor", "cowplot", "cpp11", "crayon", "cv", "DBI", "Deriv", "doBy", "doParallel", "dotCall64", "dplyr", "dsem", "e1071", "farver", "fastmap", "fields", "fishMod", "fmesher", "FNN", "foreach", "forecast", "Formula", "fracdiff", "generics", "geometries", "ggforce", "ggplot2", "ggraph", "ggrepel", "glmmTMB", "glue", "GpGp", "GPvecchia", "graphlayouts", "gridExtra", "gstat", "gtable", "gtools", "igraph", "insight", "intervals", "isoband", "iterators", "jsonlite", "KernSmooth", "labeling", "lattice", "lifecycle", "lme4", "lmtest", "lwgeom", "magrittr", "maps", "MASS", "Matrix", "MatrixModels", "memoise", "mgcv", "mi", "microbenchmark", "minqa", "modelr", "mvtnorm", "nlme", "nloptr", "nnet", "numDeriv", "pbkrtest", "pillar", "pkgconfig", "polyclip", "proxy", "purrr", "quantreg", "R6", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reformulas", "rlang", "RTMB", "s2", "S7", "sandwich", "scales", "sdmTMB", "sem", "sf", "sfheaders", "sfnetworks", "sftime", "sp", "spacetime", "spam", "sparseinv", "SparseM", "splancs", "stars", "stringi", "stringr", "survival", "systemfonts", "tibble", "tidygraph", "tidyr", "tidyselect", "timeDate", "TMB", "tweenr", "units", "urca", "utf8", "vctrs", "viridis", "viridisLite", "withr", "wk", "xts", "zoo" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "mgcv.Rmd", "filename": "mgcv.html", "title": "Comparison with mgcv", "author": "James T. Thorson", "engine": "knitr::rmarkdown", "headings": [], "created": "2023-10-16 14:29:22", "modified": "2025-09-15 20:42:13", "commits": 22 }, { "source": "dsem.Rmd", "filename": "dsem.html", "title": "Dynamic structural equation models", "author": "James T. Thorson", "engine": "knitr::rmarkdown", "headings": [ "Works cited" ], "created": "2023-10-16 20:03:29", "modified": "2026-05-19 02:48:42", "commits": 21 }, { "source": "multiple_data.Rmd", "filename": "multiple_data.html", "title": "Multiple data types", "author": "James T. Thorson", "engine": "knitr::rmarkdown", "headings": [ "Works cited" ], "created": "2024-04-02 21:31:40", "modified": "2025-12-21 03:23:47", "commits": 6 }, { "source": "spatial_factor_analysis.Rmd", "filename": "spatial_factor_analysis.html", "title": "Spatial factor analysis", "author": "James T. Thorson", "engine": "knitr::rmarkdown", "headings": [ "Spatial factor analysis", "Works cited" ], "created": "2023-11-20 20:25:34", "modified": "2025-12-21 03:23:47", "commits": 12 }, { "source": "spatial.Rmd", "filename": "spatial.html", "title": "Spatial modeling", "author": "James T. Thorson", "engine": "knitr::rmarkdown", "headings": [ "Percent deviance explained", "Visualize spatial response" ], "created": "2023-10-16 14:29:22", "modified": "2025-09-15 20:42:13", "commits": 25 }, { "source": "model-description.Rmd", "filename": "model-description.html", "title": "tinyVAST model description", "author": "James T. Thorson", "engine": "knitr::rmarkdown", "headings": [ "Bivariate generalized linear mixed model structure", "Spatial domains", "Stochastic partial differentiaul equation (SPDE)", "Simultaneous autoregressive (SAR):", "Stream networks using a tail-down exponential correlation function", "Structural equation models", "Dynamic structural equation models", "Spatial interactions for SEM and DSEM", "Generalized additive model", "Spatially varying coefficients", "Notation summary", "Works cited" ], "created": "2025-03-10 18:17:01", "modified": "2025-07-19 23:53:37", "commits": 3 } ], "_score": 7.832074400932219, "_indexed": true, "_nocasepkg": "tinyvast", "_universes": [ "vast-lib", "james-thorson-noaa" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.6.0", "date": "2026-05-19T04:10:43.000Z", "distro": "noble", "arch": "aarch64", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "6062dcdd7b257b342ed985bf3f9f701f5d26ac22bdeb3595666213b8ac2fd999", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" }, { "r": "4.7.0", "os": "linux", "version": "1.6.0", "date": "2026-05-19T04:10:55.000Z", "distro": "noble", "arch": "x86_64", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "cb663994254736303f31d6e31a3e7134abe05c7ba6947d432e4bf80e25df329d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" }, { "r": "4.6.0", "os": "linux", "version": "1.6.0", "date": "2026-05-19T04:10:34.000Z", "distro": "noble", "arch": "aarch64", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "3a0796b3e15607c7e3d4d183eb97aa0112c3e76fd50c6ffe24b462a71b7c4b5f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" }, { "r": "4.6.0", "os": "linux", "version": "1.6.0", "date": "2026-05-19T04:10:46.000Z", "distro": "noble", "arch": "x86_64", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "06168e00b8c848a10e5ae5ed13643a9f37654c84235a448235a60cef987d31d6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" }, { "r": "4.5.3", "os": "mac", "version": "1.6.0", "date": "2026-05-19T04:10:00.000Z", "arch": "aarch64", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "37f69622508e902d9f0901b611fd2911b207ce320605c06c17427ae34a2efade", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" }, { "r": "4.5.3", "os": "mac", "version": "1.6.0", "date": "2026-05-19T04:11:20.000Z", "arch": "x86_64", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "3f9ba4405c827eff49ca914ee2f78118ad026fdefe177a2ccf5f23418904c5b2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" }, { "r": "4.6.0", "os": "mac", "version": "1.6.0", "date": "2026-05-19T04:10:13.000Z", "arch": "aarch64", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "d78127312b61c30c2d26b339bdc395414c1ebafece9efa4ecf51c2783d620939", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" }, { "r": "4.6.0", "os": "mac", "version": "1.6.0", "date": "2026-05-19T04:13:22.000Z", "arch": "x86_64", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "b0b8afaac026cd2db85dc89899a624508ca5c8c16f9efe1954085b1bb9ace052", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" }, { "r": "4.7.0", "os": "win", "version": "1.6.0", "date": "2026-05-19T04:09:30.000Z", "arch": "x86_64", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "ed540be53f240231fa0dbfb969ecf59ddcef4628a5482bbb4feb2ed85967ff8c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" }, { "r": "4.5.3", "os": "win", "version": "1.6.0", "date": "2026-05-19T04:09:46.000Z", "arch": "x86_64", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "85d9df7f4a0e2811c74a78f743adf62729938753d0ba4e0f7297819310b24c4b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" }, { "r": "4.6.0", "os": "win", "version": "1.6.0", "date": "2026-05-19T04:09:05.000Z", "arch": "x86_64", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "fc6e412200208d383d690ba32cbef5464cdd59bd5a4bcbdc05340e5d263da16d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" }, { "r": "4.6.0", "os": "wasm", "version": "1.6.0", "date": "2026-06-02T15:41:13.000Z", "arch": "emscripten", "commit": "1642d8e96567341fea6cfa3ea622880f38994863", "fileid": "39e03ff41e4b9905c06fc79585c458455e4b2ea701c6d1f6ed7f2ca4a2e28fd1", "status": "success", "buildurl": "https://github.com/r-universe/vast-lib/actions/runs/26075241342" } ] }